Issue 1: once a note file has enough notes that they don't all fit on screen at the same time, problems arise when editing a note which would displace some other notes off the screen:
In this screenshot if I click any of these highlights and press enter to add a blank line or two the note automatically closes itself, but if I scroll down and edit one at the bottom it works fine.

Issue 2: the blue resources links don't work as resource links as the mouse-press opens the notes for editing; I think clicking the link should open the resource, clicking the note text should open it to edit.
Issue 3: Scrolling in compact view feels quite jerky to me — the constant re-rendering of the red delete crosses during scrolling seems unnecessary. (EDIT: that goes for Full view as well.)