I've noticed that the bible passage parser in the Wikipedia tool is struggling with footnotes. Bible references following immediately by punctuation are not being parsed. Here's an example from the article on the Ten Commandments.
And while I'm here, it would be great if you could get the table of contents working.
Thanks for reporting this, I've created a case and will look into it.
In this particular case, "Exodus" and "Deuteronomy" are already pre-linked to wikipedia pages on Exodus and Deuteronomy. For now, we have decided not to override any existing links to other wikipedia pages, although we may reconsider this in the future. Thanks for bringing it to our attention!