I don't think it's supposed to look like this after installing SR-3
(I closed both and reopened via the normal icon, and everything now seems OK (well, except for sync errors, but I assume that's unrelated), but I thought you might want to know. Unfortunately I didn't think of saving the logs.)
"The Christian way of life isn't so much an assignment to be performed, as a gift to be received." Wilfrid Stinissen
Mac Pro OS 10.9.