I updated the top two items in the library - when they refreshed the pane it was misaligned.
I updated the top two items in the library
I'm not sure what you mean by this. My interpretation is that you added tags (or similar) to them, and they were misaligned when the view refreshed? If so, did you tag them individually or together?
I'm not able to reproduce currently. Was this a one-time occurrence or is it reproducible?