Converting books from Logos 6 to Nook (with working table of contents) ?

I will be receiving a new Nook reader tomorrow and I was wondering what is the best way to convert some of my Logos books to Nook. I have program called Epubor that has allowed to convert my exported Logos 6 books to the epub format, but I am not sure if the table of content will work in the Nook reader. When I click on the chapter links on the table of content on either epub, Word or HTML format, the file attempts to open the chapter on Logos instead of just going to the chapter directly on the document I am reading it from.
Does anyone have any tips on the best way to go about exporting my Logos books to the Nook reader?
Thank you all and God Bless
Diego
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Step 1: Check that it is legal.
Step 2: Check that it is ethical.
NB. I don't know the answer to either question.
Orthodox Bishop Alfeyev: "To be a theologian means to have experience of a personal encounter with God through prayer and worship."; Orthodox proverb: "We know where the Church is, we do not know where it is not."
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Logos has the ability to export the books and the send to Kindle capability so I would assume it is both legal and ethical. I also found this https://wiki.logos.com/Export_a_Logos_Resource_to_an_eReader_format_$28Kindle,_Nook,_etc.$29 which tells me I am allowed to do what I want to do. Now I simply want to be sure that the Table of contents will work when I import them into my Nook reader, or if there is anything I need to do to enable that capability before I import the books into my Nook device.
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Through further research it turns out I am allowed to export portion of books to my Nook reader. I'll refer anyone wanting to know the steps on doing an export to any ebook reader https://wiki.logos.com/Export_a_Logos_Resource_to_an_eReader_format_$28Kindle,_Nook,_etc.$29
God Bless
Diego
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