I entered John 1:1-5 in the Go box on the homepage and got the layout as show below. This is as expected - I don't have any custom layouts defined.

As outlined, one of the Bibles shown is the NLT.
I also have a reading plan for the NLT and when I switch back to the homepage and click on the next reading the open NLT is updated to reflect that - in this case Joshua 15:20

However, if I press F11 to put it into reading view it reverts back to the John passage
