After many years of requests...the Atlas still seems to be an achilles heel in Logos Bible.
I would love if Logos would have meta tags tied from the Bibles, Commentaries, etc. contextually to the names of places in the Atlas. Thus, if Abraham was leaving "Haran" and I clicked (or Right clicked, Double/Triple clicked) on that word, I could have the context menu (or Double/Triple click) engage the link. You could have a "Link set" that would automatically update the map based on the text you are currently in (if applicable).
I hope this feature does not get buried like other related requests for the map/atlas. Blessings.