1) Logos starts indexing some small download (like the Lexham update the other day).
2) Time Machine has the bad taste of finding this an excellent time for the hourly back-up.
3) Done separately these processes would have taken a couple of minutes each. Done simultaneously they take something like 2 hours! During which time the computer is, of course, not all that responsive.
This is slightly annoying...
I can't say with absolute certainty that it happens every time, but it has certainly happened enough times for me to believe it happens every time. I'll try to remember to manually run Time Machine just before indexing in the future, until this is fixed, but of course I'll forget more often than not...
I also just saw another post mentioning Time Capsule as a probable cause for an increased number of errors, so there might be something bigger going on as well: http://community.logos.com/forums/p/26776/197953.aspx#197953.