So my Macbook Pro spent all yesterday indexing (A 2). Just before I went to bed it asked to install updates and restart. I told it yes then went to bed, leaving the computer on to finish indexing. However, this morning when I got up there were two Logos 4's running, A2 and A3. A2 had access to my books, A3 did not, it reports resources missing (although, I only tried to open the ESV, which A2 had open.)
So, I just quit both instances of Logos and restated. It took a took a long time to prepare my library and not it is indexing again! At least A3 sees my books now...
OS X 10.5.8
2.6 GHz Intel Core 2 Duo
2GB 667 MHz DDR2 SDRAM