Okay, I step back to look at the BWS afresh - with words that seemed straightforward rather than a word that presents difficulties. In the clean example, I have only two pieces that still don't make sense:
1. How does קָדֵשׁ 2 end up with 2 roots when there is no oblivious compounding and the 1st homograph does not show 2 roots?
2. Why does קָדֵשׁ 2 end up with no results in the Senses section? The examples uses does show it being used as a noun.
