Logos 6.2 Beta 2 Mac OS 10.10.2
This may be a known issue, but it just bit me this morning. If I put a space after a Scripture reference, the linking works as expected. But if I put a period immediately after the reference, the link disappears. If memory serves—which it may not—linking did not work this way is earlier versions. I could type a link, adda space, receive the auto link, then back space and add punctuation, and the link would remain active. Alas, it no longer works this way.
I have no idea how long this bug has existed, but it does bug me.