I am running OSX 10.9.5, Logos 6.3.0074. In the Logos preferences I have the default resource font set to Times New Roman, and the default Notes font set to Gentium. However when I use the copy Bible Verse function (regardless of how I get there) and paste the verse(s) into notes the text is ALWAYS Hevetica 9. I have looked over the wiki entry on editing the copy bible verse templates but there is no setting for a default paste font, so I have no idea where Helvetica 9 is coming from.
I can only assume that this is a bug somewhere that neglects the default font.