Indexing Problem

With beta 2 I was getting constant indexing on two different installations (iMac & MacBook Air). I thought it might be related to this: BUG MAC Indexing or this BUG: Fatal Mono Error in 6.10 Beta 2
So I just decided to go back to the stable version and went to the extreme measure of starting fresh. I deleted every trace of Logos even .mono and .config (though I saved my resources folder to scan). However, when I dl'ed the stable version and started it all I got was a Logos menu. When clicking on it there where about four untitled menu items. I could not get the stable version to start. So I dl'ed the beta and it started. So I went through the scanning and indexing (only took a couple of hours).
The indexing is not constantly starting over. However, the program is acting strange. Some unexpected quits, some spontaneous yellow strip and preparing library. Not sure if it means anything but thought I might post logs just in case.