The traditional "punctuation" of the Hebrew Bible is from a time more than 1000 years after the Tanakh was completed. The language had evolved meanwhile, lost many of its consonants, and changed its pronunciation. In my opinion the masoretic text should be enriched, by restoring the consonant system that hebrew language used during the time when these books were authored originally.
I also think that it is time to take the same leap of progress in hebrew manuscripts of the Bible, which was done with greek manuscripts already 1000 years ago: write the Hebrew Bible text with a two-case writing system, with uppercase and lowercase letters.
In the attached image I demonstrate, how hebrew text could look with diacritical marks that indicate the "lost consonants", which the masoretic text fails to indicate, most of which were still in use when the last book of the Hebrew Bible was authored, and all of them may have been in use during the era of Abraham or Mosheh. I am experimenting with a modernized vowel pointing system, which is based on modern western diacritical marks, and "sparing vowelization", which omits all shwas, the expected vowel points in front of a mater lectionis letter, and the expected long A before word-final H or alef. (Unexpected vowels are always marked before these letters, however.)
In some of the sample words I demonstrate "small caps" text style, with uppercase and lowercase letters whose letter design is basically identical. (I spare you now from using a true two-case writing system for hebrew, which uses the more difficult-to-read paleo hebrew letters as lowercase, and square script as uppercase. I can demonstrate that option too, if requested.) What comes to the technical side of two-case hebrew text, my current solution is to have uppercase letters in one font, and lowercase letters in a different font. Thus the text is encoded with the expected hebrew Unicode letters and vowels, and changing the font to any popularly used hebrew font would keep the text perfectly readable -- just losing its two-case nature.