The codes at the end of my test docx file show a few things wrong with the {{ }} syntax for Fields.
7080.Peacemakers.docx

To get the space after the 3:15 milestone and footnote 2 I had to expand the character spacing (Ctrl+D in Word 2007) by 2 points, else there is no space as per the 3:16 milestone.
The compiled resource shows Search Fields for footnote, but not bible text. The Basic Search drop-down shows no fields.
The syntax to ignore the Jn 3:16 reference had to be amended.
Headwords no longer appear as an active reference (they did with @Topic).
NB. makes no difference if the document is built as Bible Notes or Bible.