There is a similar thread but I am starting a new one.
I have made a PB dokument with references to the first verse in every bible book. The autodetection only finds 45 verses/books out of 77.
Logos 4 fails to detect 1 Mos 1:1 (Gen 1:1) but if I type [[1 Mos 1:1|bible:1 Mos 1:1]] then I got a working reference.
When I hovering over the refrence to Est 1:1 there is an error and I get Esra 1:1 in the popup window.
Here is a screenshot. In the source document every bible reference is on a seperate line. The screenshot is in viewing mode with 5 columns:

Here is the source in a text file: 5633.BibleRefs.txt