Still have not seen a response or recognition by Logos as a known issue for this bug, so we'll give it its own thread.
Markup items like underlining and yellow glow work perfectly, however markups that are simple highlighters only show up in low light mode, so they are transferring cross platform but not in normal mode.
The issue seems to be connected to AOSP based Roms, like CM 9 but I tested a pre-alpha version of CM10 and they show up perfectly. They also show up fine on my stock HTC Rezound running ICS.
They do not show up in normal mode on:
Tablet: HP TouchPad
App: Bible
Android OS: CyanogenMod 9 4.04