I never really tracked with the changes to highlighting a while back, where your highlights are now stored in a Notes file. I'm now trying to wrap my head around it and clean up all my Palettes and Notes files and associate them properly so that new highlighting I apply goes in the right file.
One question I have is this: if you are looking at a highlighted passage in an open resource, how can you find out what Notes file that highlight is stored in? (I've got dozens of them, and they're a jumbled mess.) If you didn't attach a Note there, but just a Highlight, there's no Note Indicator to click on to jump to the corresponding Notes file. So how else can you find where it's stored?
Next question is: is there any way to set the default Note Indicator color per Notes file? When I change a single note indicator color and click "Use this style by default" it appears to change it from that point forward for all Notes files.
Finally (and this will probably have to be a suggestion): it's really annoying that you can't select multiple notes at a time and change the Note Indicator color on all of them at once. Am I missing something, or is this really not possible?