It seems that the Pashta's are consistently tagged as Qadma (see screen shot (which also shows the problem of the Mahpakh not showing up)).

I'm not sure why this would be because the shape is the same, the two are separate Unicode characters...
HEBREW ACCENT QADMA
Unicode: U+05A8, UTF-8: D6 A8
֙
HEBREW ACCENT PASHTA
Unicode: U+0599, UTF-8: D6 99